Comparison of Estimates of False Negative Fraction (FNF) and Predictions when different Non-informative Priors are used in a two-stage Screening Test
Abstract
Summary measures of the performance of a diagnostic kit require all study subjects to be verified via a gold standard procedure. However the subjection of all subjects to such a procedure may not be possible due to associated risks, invasiveness and cost. In normal practice only those who register at least one positive test result undergo the confirmatory procedure. Over the recent past different models have been proposed to estimate the false negative fraction (FNF) in this partial verification scenario using Maximum Likelihood and Bayesian techniques. In the Bayesian framework different priors have been proposed for the parameter of a Bernoulli distribution. In this work we compared the estimates of FNF obtained when three different non-informative priors are assigned to the probability of an individual testing positive and further did some validation by comparing the predictions with the actual observed data. Results show that the estimates of the FNF under three selected non-informative priors are largely similar. We conclude that though different forms of non-informative priors for the parameter of the Bernoulli distribution are in existence they do lead to similar results. The choice of the non-informative prior to use does not really matter. However, it was found that the predictions based on each of the three selected non- informative priors did not fit the observed data quite well.
References
Akaike, H. (1978). A new look at Bayes procedure. Biometrka. 65: 53-59.
Berger, J. (1985). Statistical Decision Theory and Bayesian Analysis. Springer- Verlag, New York. 632 pp.
Bernardo, J. M. (1979). Reference prior distributions for Bayesian inference (with discussion). J. Roy. Statist. Soc. 41: 113- 147.
Carlin, B. P. & Louis T. A. (1996). Bayes and Empirical Bayes Methods for Data Analysis. Chapman & Hall, New York. 436 pp.
Held, L. & Ranyimbo, A. O. (2004). A Bayesian approach to estimate and validate the false negative fraction in a two-stage multiple screening test. Methods of Information in Medicine. 43: 461-464.
Jeffreys, H. (1961). Theory of Probability (3rd edn.). Oxford University Press, London. 472 pp.
Lloyd, C. J. & Frommer, D. J. (2004). Estimating the false negative fraction for a multiple screen test for bowel cancer when the negatives are not verified. Australian and New Zealand Journal of Statistics. 46: 531-542.
Novick, M. R. & Hall, W. J. (1965). A Bayesian indifference procedure. J. Amer. Statist. Assoc. 60: 1104-1117.
Zellner, A. (1971). An Introduction to Bayesian Inference in Econometrics. Wiley, New York. 448 pp.
Zellner, A. (1977). Maximal data information prior distributions. In: Aykac, A. and Brumat, C. (Eds). New Methods in the Applications of Bayesian Methods. Proceedings of the CEDEP-INSEAD Conference, (Contribution to Economic Analysis Series) Vol. 119, North-Holland, Amsterdam.pp. 211-232